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2006, Number 4

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Rev Invest Clin 2006; 58 (4)

Confirmation of tyrosine 698 in beta subunit of cGMP phosphodiesterase in patients with retinitis pigmentosa and population of the west of Mexico

Núñez-Gutiérrez IC, García-Cruz D, Fragoso-Herrera R, Medina-Lozano C
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Language: English
References: 5
Page: 359-361
PDF size: 54.59 Kb.


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The cGMP phosphodiesterase beta-subunit (PDEB), when associated with a cGMP phosphodiesterase alpha-subunit, forms a functional holoenzyme that participates in the processes of transmission and amplification of the visual signal in rod cells. Both subunits have two cGMP-binding sites (GAF) in the N-terminal half and a catalytic domain (PDEase) in the C-terminal portion. The PDEB gene (4p16.3) presents with at least 28 reported mutations causing hereditary retinitis pigmentosa (RP), 27 polymorphic sites, and seven regions in conflict. ‘Regions in conflict’ are those with more than one version of the nucleotide sequence encoded by a specific DNA region. The conflict at site 698 in the PDEB protein is caused by the putative assignment of the amino acids isoleucine (Ile) or tyrosine (Tyr), coded by ATC and TAC triplets, respectively.


REFERENCES

  1. The Universal Protein Resource (UniProt) [database on the Internet] in Protein Information Resource. UniProtKB Entry: P35913 [last annotations in 2006-04-18]. Available from: http://www.pir.uniprot.org/cgi-bin/upEntry?id=P35913.

  2. McLaughlin ME, Ehrhart TL, Berson EL, Dryja TP. Mutation spectrum of the gene encoding the β subunit of rod phosphodiesterase among patients with autosomal recessive retinitis pigmentosa. Proc Natl Acad Sci USA 1995; 92: 3249-53.

  3. Interpro [database in Internet] in European Molecular Biology Laboratory/European Bioinformatics Institute EMBL/EBI. ID: IPR002073. Available from: http://www.ebi.ac.uk/interpro/IEntry?ac=IPR002073

  4. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997; 25: 3389-3402.

  5. Peitsch MC. Protein modelling by E-mail. Bio/Technology 1995; 13: 658-660; Guex N, Peitsch MC. Swiss-Model and the Swiss-PdbViewer. An environment for comparative protein modelling. Electrophoresis 1997; 18: 2714–2723; Schwede T, Kopp J, Guex N, Peitsch MC. Swiss-Model: an automated protein homology-modeling server. Nucleic Acids Res 2003; 31: 3381-5.




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Rev Invest Clin. 2006;58